Sounds like you have the corrupt firmware that came from the coop. No issues, try this hex I have attached and see if it fixes the problem. Its the same attached to the wiki, just already in hex and tested on an Aeon.
That was the exact same result I had when originally powered up with the corrupt hex. It is a happy accident as it lets you know all your LEDs work

. Which my next Aeon I will keep that firmware to just confirm all LEDs are ok before flashing.
If this file doesnt fix it, how are you using the pickit 3? the mlab or the ""express" software?